Publications

Publications by categories in reversed chronological order.

2025

  1. proto-rset.png
    Rashomon Sets for Prototypical-Part Networks: Editing Interpretable Models in Real-Time
    Jon Donnelly, Zhicheng Guo, Alina Jade Barnett, and 3 more authors
    In Proceedings of the Computer Vision and Pattern Recognition Conference, 2025
  2. dennis.png
    This EEG Looks Like These EEGs: Interpretable Interictal Epileptiform Discharge Detection With ProtoEEG-kNN
    Dennis Tang, Jon Donnelly, Alina Jade Barnett, and 8 more authors
    In Conference on Medical Image Computing and Computer Assisted Intervention, 2025
  3. edna.png
    Creating interpretable deep learning models to identify species using environmental DNA sequences
    Samuel Waggoner, Jon Donnelly, Rose Gurung, and 2 more authors
    Scientific Reports, 2025
  4. pred-eq.png
    Leveraging Predictive Equivalence in Decision Trees
    Hayden McTavish*, Zachery Boner*, Jon Donnelly*, and 2 more authors
    arXiv preprint arXiv:2506.14143, 2025
  5. loc-health.png
    How your location relates to health: Variable importance and interpretable machine learning for environmental and sociodemographic data
    Ishaan Maitra, Raymond Lin, Eric Chen, and 3 more authors
    In Proceedings of the AAAI Conference on Artificial Intelligence, 2025
  6. multisite.png
    Multi-site validation of an interpretable model to analyze breast masses
    Luke Moffett, Alina Jade Barnett, Jon Donnelly, and 4 more authors
    PloS one, 2025
  7. lit.png
    It’s LIT! Reliability-Optimized LLMs with Inspectable Tools
    Ruixin Zhang, Jon Donnelly, Zhicheng Guo, and 4 more authors
    In 39th Conference on Neural Information Processing Systems (NeurIPS 2025)Workshop: Workshop on Multi-Turn Interactions in Large Language Models, 2025
  8. universe.png
    Doctor Rashomon and the UNIVERSE of Madness: Variable Importance with Unobserved Confounding and the Rashomon Effect
    Jon Donnelly*, Srikar Katta*, Emanuele Borgonovo, and 1 more author
    arXiv preprint arXiv:2510.12734, 2025

2024

  1. asymmirai.png
    AsymMirai: Interpretable Mammography-Based Deep Learning Model for 1–5-Year Breast Cancer Risk Prediction
    Jon Donnelly, Luke Moffett, Alina Jade Barnett, and 4 more authors
    Radiology, 2024
  2. protovit.png
    Interpretable Image Classification with Adaptive Prototype-based Vision Transformers
    Chiyu Ma, Jon Donnelly, Wenjun Liu, and 3 more authors
    In Advances in Neural Information Processing Systems, 2024
  3. protopnext.png
    This Looks Better Than That: Better Interpretable Models with ProtoPNext
    Frank Willard, Luke Moffett, Emmanuel Mokel, and 6 more authors
    arXiv preprint arXiv:2406.14675, 2024
  4. fpn.png
    FPN-IAIA-BL: A Multi-Scale Interpretable Deep Learning Model for Classification of Mass Margins in Digital Mammography
    Julia Yang, Alina Jade Barnett, Jon Donnelly, and 6 more authors
    In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024
  5. m-gam.png
    Interpretable generalized additive models for datasets with missing values
    Hayden McTavish*, Jon Donnelly*, Margo Seltzer, and 1 more author
    Advances in Neural Information Processing Systems, 2024
  6. position.png
    Position: Amazing Things Come From Having Many Good Models
    Cynthia Rudin, Chudi Zhong, Lesia Semenova, and 7 more authors
    In International Conference on Machine Learning, 2024

2023

  1. rid.png
    The Rashomon Importance Distribution: Getting RID of Unstable, Single Model-Based Variable Importance
    Jon Donnelly, Srikar Katta, Cynthia Rudin, and 1 more author
    Advances in Neural Information Processing Systems, 2023
  2. protoeegnet.png
    ProtoEEGNet: An Interpretable Approach for Detecting Interictal Epileptiform Discharges
    Dennis Tang, Frank Willard, Ronan Tegerdine, and 8 more authors
    In Medical Imaging Meets NeurIPS, 2023

2022

  1. deformable.png
    Deformable ProtoPNet: An Interpretable Image Classifier using Deformable Prototypes
    Jon Donnelly, Alina Jade Barnett, and Chaofan Chen
    In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022